scRL.Simulator.Core.get_sim_df

scRL.Simulator.Core.get_sim_df(gres, trainer, lineages=None, steps=50, prefix=None)[source]

Integrating simulated data for down stream analysis

Parameters:

  • gres – Grid embedding results

  • trainer – A trainer after training in simulating mode

  • lineage – Lineage types for predicting trajectories cell types (Default: None)

  • steps – Simulating steps each trajectory (Default: 50)

  • prefix – String for identifying multiple lineages (Default: None)

Return type:

None