GridCore

scRL.GridCore.grids_from_embedding

Function for generating grids embedding Assuming that most of the two-dimensional embeddings of large scale single-cell data can represent the generation process and inherent dynamics of the data to some extent, a derivative grids representaion of the embedding therefore can provide us with a more simplified and comprehensive perspective of the data space.

scRL.GridCore.project_cluster

Function for projecting annotations When analyzing single-cell data, it is necessary to assemble clusters of similar cells, typically based on a network of neighbors extracted from any low-dimensional embedding.

scRL.GridCore.align_pseudotime

This function aligns pseudotime across a grid-based representation of data.

scRL.GridCore.project_back

This function projects grid-based data back to the original points.